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IMPORTANT ANNOUNCEMENT: To accommodate reviewer and recommender holiday schedules, we will be closed to ALL submissions from 1st Jul - 1st Sep. During this time, reviewers can submit reviews and recommenders can issue decisions, but no new or revised submissions can be made by authors.

The one exception to this rule is that authors using the scheduled track who submit their initial Stage 1 snapshot prior to 1st Jul can choose a date within the shutdown period to submit their full Stage 1 manuscript.

We recommend that authors submit at least 1-2 weeks prior to commencement of the shutdown period to enable time to make any required revisions prior to in-depth review.

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Latest recommendations

IdTitle * Authors * Abstract * PictureThematic fields * RecommenderReviewersSubmission date
08 May 2025
STAGE 2
(Go to stage 1)

Changes in memory function in adults following SARS-CoV-2 infection: findings from the Covid and Cognition online study.

Evidence for General Long-Term Memory Impairment Following SARS-CoV-2 Infection

Recommended by ORCID_LOGO based on reviews by Phivos Phylactou, Mitul Mehta and 1 anonymous reviewer
COVID-19 has been associated with cognitive impairments, particularly in memory performance (Guo et al., 2022). Given that associative memory typically declines earlier than item memory in conditions such as mild cognitive impairment (Chen & Chang, 2016), it remains an open question whether COVID-19 differentially affects item and associative memory. Furthermore, it is unclear whether such effects are specific to verbal or non-verbal material. To investigate these questions, Weinerova et al. (2024) recruited participants via long-COVID Facebook groups and clinical settings. They reported a significant detrimental effect of COVID-19 status on long-term memory performance across tasks. However, they did not find evidence for their preregistered hypothesis of an interaction between COVID-19 status and either memory type (item vs. associative) or stimulus type (verbal vs. non-verbal).
 
In the Stage 1 report, the authors preregistered a Bayes Factor threshold of 6 as the criterion for supporting the alternative hypothesis. All planned analyses were preregistered, incorporating both frequentist methods (to replicate Guo et al., 2022) and Bayesian ANCOVA (to test the preregistered hypotheses). As data collection had been completed at the time of Stage 1 submission, we assigned a Level 3 bias control to the Stage 1 report.
 
In the Stage 2 report, the authors confirmed a general negative impact of COVID-19 on long-term memory accuracy. Using frequentist ANCOVA, they successfully replicated Guo et al. (2022)’s findings of reduced accuracy in verbal item and non-verbal associative memory among individuals with prior COVID-19 infection. However, they did not replicate the previously observed effect on reaction times. The Bayesian ANCOVA analyses did not reach the preregistered evidential threshold (BF > 6). Verbal associative memory, which was not part of the original replication attempt, also showed reduced accuracy in individuals with prior infection. In contrast, performance on non-verbal item memory tasks showed a ceiling effect, possibly due to methodological differences from Guo et al. (2022). Across all four memory tasks, the authors found robust evidence for decreased accuracy associated with COVID-19 status but no effect on reaction times.
 
Contrary to their hypotheses, models that included interactions between COVID-19 status and either memory type or stimulus type were less likely than the null model, suggesting a general, rather than specific, detrimental effect of COVID-19 on long-term memory.
 
Analyses of vaccination status yielded inconclusive results, likely due to limited sample size and uncertainty in participants' self-reports of vaccination timing relative to infection. The question of whether vaccination has protective effects on cognition remains unresolved and merits further investigation. The authors also reported tentative exploratory findings, such as a potential association between longer time since infection and slower reaction times in verbal item memory tasks. These observations require confirmation in future studies.
 
Overall, the study makes a valuable contribution by replicating prior findings and extending them to suggest a broad impairment of long-term memory associated with COVID-19.
 
The Stage 2 report was reviewed by the same three reviewers who had evaluated the Stage 1 submission. All reviewers agreed that the authors had addressed prior comments and had adhered to the preregistered methodology and analysis plan. As in the Stage 1 evaluation, we note the potential for selection bias introduced by recruiting participants via long-COVID Facebook groups. Individuals with post-infection cognitive complaints may have been more likely to volunteer, limiting generalizability to the broader SARS-CoV-2-infected population. This and other limitations are clearly acknowledged in the Discussion section of the Stage 2 manuscript. The recommender judged that the manuscript met all Stage 2 criteria for recommendation.
 
URL to the preregistered Stage 1 protocol: https://osf.io/tjs5u
 
Level of bias control achieved: Level 3. At least some data/evidence that was used to the answer the research question had been accessed by the authors prior to in-principle acceptance (e.g. downloaded or otherwise received), but the authors certify that they had not yet observed ANY part of the data/evidence.
 
List of eligible PCI RR-friendly journals:
 
References

1. Chen, P.-C., & Chang, Y.-L. (2016, May). Associative memory and underlying brain correlates in older adults with mild cognitive impairment. Neuropsychologia, 85, 216–225. https://doi.org/10.1016/j.neuropsychologia.2016.03.032
 
2. Guo, P., Benito Ballesteros, A., Yeung, S. P., Liu, R., Saha, A., Curtis, L., ... Cheke, L. G. (2022b). COVCOG 2: Cognitive and memory deficits in long COVID: A second publication from the COVID and Cognition Study. Frontiers in Aging Neuroscience, 14, 804937. https://doi.org/10.3389/fnagi.2022.804937
 
3. Weinerova, J., Yeung, S., Guo, P., Yau, A., Horne, C., Ghinn, M., Curtis, L., Adlard, F., Bhagat, V., Zhang, S., Kaser, M., Bozic, M., Schluppeck, D., Reid, A., Tibon, R., & Cheke, L. (2025). Changes in memory function in adults following SARS-CoV-2 infection: Findings from the Covid and Cognition online study [Stage 2]. Acceptance of Version 1 by Peer Community in Registered Reports. https://osf.io/q5vu2?view_only=228165eb161d490b945ca019143ba98c
Changes in memory function in adults following SARS-CoV-2 infection: findings from the Covid and Cognition online study.Josefina Weinerova, Sabine Yeung, Panyuan Guo, Alice Yau, Connor Horne, Molly Ghinn, Lyn Curtis, Frances Adlard, Vidita Bhagat, Seraphina Zhang, Muzaffer Kaser, Mirjana Bozic, Denis Schluppeck, Andrew Reid, Roni Tibon, Lucy Cheke<p>SARS-CoV-2, the virus responsible for the Covid-19 pandemic, has been shown to have an impact on cognitive function, but the specific aspects of cognition that are affected remain unclear. In this Registered Report, we analysed cognitive data c...Life SciencesVishnu Sreekumar Mitul Mehta, Anonymous, Phivos Phylactou, Benedict Michael2024-11-21 12:32:53 View
20 Feb 2025
STAGE 2
(Go to stage 1)

Neophobia across social contexts in juvenile Herring gulls

Herring gulls exhibit reduced neophobia when tested in groups

Recommended by ORCID_LOGO based on reviews by Claudia Mettke-Hofmann and 1 anonymous reviewer
How well animals may be able to cope with changes of habitat, specifically with rapid changes and thus novelty they encounter in an environment densely populated by humans, may be influenced by how they respond to novelty in general (Batisteli et al., 2022; Biondi et al., 2024; Castano et al., 2024; Heales et al., 2024). In considering this, it may be important to account for any difference in behavioural responses that animals exhibit when encountering a novel situation alone versus when they are doing so as part of a group.
 
Here, Allaert et al. (2025) tested how neophobia – the fear of unfamiliar objects – is affected by the social context in gulls, birds that are increasingly forced to live in urban environments due to the loss of natural coastlines. In this study, in which they reared herring gulls from egg and tested them taking into account that nestmates are not tested within the same groups, the authors found that the birds were faster to eat and spent more time in the zone of interest when they were tested in a group than when they were tested individually, specifically when a novel object was placed next to the food compared to when that object was a familiar one. The birds were also faster to enter the testing area when tested in a group, but this was not specific to the novel object condition. In addition to these changes in the average responses, the authors also report reduced variance when tested in a group in two of their three measures, namely in the latency to enter the testing area and time spent in the zone of interest.
 
The authors interpret their findings as being mostly in line with the ‘risk-dilution’ hypothesis, which is often considered in terms of predation risk (Krause & Buxton, 2002). They discuss possible reasons why other studies, with different species and different methodological setups, found support for alternative explanations.
 
The Stage 2 report was evaluated by the same two reviewers who had also reviewed the Stage 1 manuscript. In the revision, the authors focused on adding sex as a factor in their statistical models, which was the planned procedure for the statistical analyses in the Stage 1 report, and adding information regarding the problems encountered during testing and how these were handled. This specifically refers to the planned sample size (which the authors planned in the Stage 1 report taking into account both mortality and the fact that some birds would be not herring gulls but lesser black-backed gulls, which can only be established after hatching). However, there was higher than expected mortality, leading to a larger-than-planned overall reduction in sample size. During the study, the authors had contacted the recommender and discussed this issue, and the recommender advised on continuing the study and approved of the planned changes in the Stage 2 report. During the revision process, the authors added more information and also conducted an exploratory analysis, which included all birds, i.e. herring gulls and lesser black-backed gulls. This was suggested by a reviewer and the authors present this exploratory analysis in full in the supplemental material, while the main inferences are presented in the main text. In addition, during the Stage 2 review it became apparent that some minor details regarding the procedure would be useful to be included in the Stage 2 report, which the authors included in the Stage 2 revision. This did not alter the procedure as described in the Stage 1 report, but merely added more clarity to the text.
 
Based on detailed engagement with these points and the reviewers' comments, the recommender judged that the manuscript met the Stage 2 criteria and awarded a positive recommendation.
 
URL to the preregistered Stage 1 protocol: https://osf.io/u4b7q
 
Level of bias control achieved: Level 6No part of the data or evidence that was used to answer the research question was generated until after IPA.
 
List of eligible PCI RR-friendly journals:
 
 
References
 
1. Allaert, R., Knoch, S., Braem, S., Debeer, D., Martel, A., Müller, W., Stienen, E., Lens, L., & Verbruggen, F. (2025). Neophobia across social contexts in juvenile Herring gulls [Stage 2]. Acceptance of Version 3 by Peer Community in Registered Reports. https://osf.io/b58ha
 
2. Batisteli, A. F., Pizo, M. A., & Sarmento, H. (2022). Female neophobia predicts the use of buildings as nesting sites in a Neotropical songbird. Animal Behaviour, 183, 151-157. https://doi.org/10.1016/j.anbehav.2021.11.008
 
3. Biondi, L. M., Medina, A., Bonetti, E. A., Paterlini, C. A., & Bó, M. S. (2024). Cognitive flexibility in a generalist raptor: a comparative analysis along an urbanization gradient. Behavioral Ecology, 35, arae025. https://doi.org/10.1093/beheco/arae025
 
4. Castano, M. V., Zumpano, F., Biondi, L. M., & García, G. O. (2024). Does urbanization affect behavioral responses to novel objects in marine birds? The Olrog’s Gull as a case of study. Urban Ecosystems, 27, 427-437. https://doi.org/10.1007/s11252-023-01465-2
 
5. Heales, H. E., Flood, N. J., Oud, M. D., Otter, K. A., & Reudink, M. W. (2024). Exploring differences in neophobia and anti-predator behaviour between urban and rural mountain chickadees. Journal of Urban Ecology, 10, juae01. https://doi.org/10.1093/jue/juae014
 
6. Krause, J. & Ruxton, G. (2002). Living in Groups. Oxford University Press, USA.
Neophobia across social contexts in juvenile Herring gullsReinoud Allaert, Sophia Knoch, Simon Braem, Dries Debeer, An Martel, Wendt Müller, Eric Stienen, Luc Lens, Frederick Verbruggen<p>Neophobia, the fear or avoidance of the unfamiliar, can have significant fitness consequences. It is typically assessed by exposing individuals to unfamiliar objects when they are alone, but in social species the presence of conspecifics can in...Life SciencesLjerka Ostojic2024-11-26 13:25:23 View
14 Jan 2025
STAGE 1
article picture

Implementing a rapid geographic range expansion - the role of behavior and habitat changes

The role of behavior and habitat availability on species geographic expansion

Recommended by ORCID_LOGO
Note from the PCI RR Managing Board: This Stage 1 recommendation was originally written by Esther Sebastián González for PCI Ecology on 06 Oct 2020 and was transferred to PCI Registered Reports on 14 Jan 2025 to facilitate the submission and evaluation of the resulting Stage 2 submissions. The link to the original recommendation and review history at PCI Ecology may be found at this link (and in PDF format here).
 
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Understanding the relative importance of species-specific traits and environmental factors in modulating species distributions is an intriguing question in ecology [1]. Both behavioral flexibility (i.e., the ability to change the behavior in changing circumstances) and habitat availability are known to influence the ability of a species to expand its geographic range [2,3]. However, the role of each factor is context and species dependent and more information is needed to understand how these two factors interact. In this pre-registration, Logan et al. [4] explain how they will use Great-tailed grackles (Quiscalus mexicanus), a species with a flexible behavior and a rapid geographic range expansion, to evaluate the relative role of habitat and behavior as drivers of the species’ expansion [4]. The authors present very clear hypotheses, predicted results and also include alternative predictions. The rationales for all the hypotheses are clearly stated, and the methodology (data and analyses plans) are described with detail. The large amount of information already collected by the authors for the studied species during previous projects warrants the success of this study. It is also remarkable that the authors will make all their data available in a public repository, and that the pre-registration in already stored in GitHub, supporting open access and reproducible science. I agree with the three reviewers of this pre-registration about its value and I think its quality has largely improved during the review process. Thus, I am happy to recommend it and I am looking forward to seeing the results.
 
 
Level of bias control achieved: Level 1. At least some of the data/evidence that will be used to the answer the research question has been accessed and observed by the authors, including key variables, but the authors certify that they have not yet performed any of their preregistered analyses, and in addition they have taken stringent steps to reduce the risk of bias.
 
List of eligible PCI-RR-friendly journals:
 
 
References
 
[1] Gaston KJ. 2003. The structure and dynamics of geographic ranges. Oxford series in Ecology and Evolution. Oxford University Press, New York.
 
[2] Sol D, Lefebvre L. 2000. Behavioural flexibility predicts invasion success in birds introduced to new zealand. Oikos. 90(3): 599–605. https://doi.org/10.1034/j.1600-0706.2000.900317.x
 
[3] Hanski I, Gilpin M. 1991. Metapopulation dynamics: Brief history and conceptual domain. Biological journal of the Linnean Society. 42(1-2): 3–16. https://doi.org/10.1111/j.1095-8312.1991.tb00548.x
 
[4] Logan CJ, McCune KB, Chen N, Lukas D. 2020. Implementing a rapid geographic range expansion - the role of behavior and habitat changes (http://corinalogan.com/Preregistrations/gxpopbehaviorhabitat.html) In principle acceptance by PCI Ecology of the version on 16 Dec 2021 https://github.com/corinalogan/grackles/blob/0fb956040a34986902a384a1d8355de65010effd/Files/Preregistrations/gxpopbehaviorhabitat.Rmd
 
=======
 
Full review history: [link]
 
Implementing a rapid geographic range expansion - the role of behavior and habitat changesCorina J Logan, Kelsey B McCune, Nancy Chen, Dieter Lukas<p>It is generally thought that behavioral flexibility, the ability to change behavior when circumstances change, plays an important role in the ability of a species to rapidly expand their geographic range (Chow et al., 2016; Griffin &amp; Guez, ...Life SciencesChris Chambers2025-01-13 12:12:15 View
08 May 2025
STAGE 2
(Go to stage 1)

They look virtually the same: extraretinal representation of symmetry in virtual reality

Immersive virtual reality environments support the processing of extraretinal symmetry

Recommended by ORCID_LOGO based on reviews by Tadamasa Sawada and Felix Klotzsche
​Karakashevska and colleagues (2025) examined the extraretinal representation of visual symmetry presented in a virtual reality environment. Previous research has demonstrated that individuals can detect symmetry when the symmetry is represented on a perspective plane, slanted away from the viewer. In electroencephalography (EEG), perceived symmetry is marked by an Event Related Potential (ERP) called a Sustained Posterior Negativity (SPN). When symmetry is presented on a perspective plane in comparison to front-on (frontoparallel), the SPN is reduced, termed the perspective cost. Here, Karakashevska et al. (2025) determined if presenting symmetry on a perspective plane in a virtual reality (VR) environment reduced the perspective cost with the addition of 3D depth cues. Specifically, participants were requested to detect symmetry or luminance of a stimulus presented in a VR environment whilst wearing an EEG.
 
The authors found no perspective cost during the regularity task when symmetry was presented on a frontoparallel plane versus symmetry on a perspective plane. When participants were performing the luminance task, the authors found no conclusive evidence for the presence or absence of perspective cost. Together these data suggest that when immersed in a virtual reality (VR) environment, critical depth cues are available to overcome perspective cost in the perception of symmetry. 
 
The Stage 2 manuscript was evaluated by two expert reviewers. One of our reviewers reviewed the Stage 1 manuscript, and one reviewer was new. The reviewers agreed that the authors had adhered to their registered Stage 1 manuscript and were convinced by the interpretation of the results. The recommender has determined that the Stage 2 criteria was met and has awarded a positive recommendation. ​
 
URL to the preregistered Stage 1 protocol: https://osf.io/7pnxu
 
Level of bias control achieved: Level 6. No part of the data or evidence that was used to answer the research question was generated until after IPA. 

List of eligible PCI RR-friendly journals:
 
 
References
 
Karakashevska, E., Batterley, M/, Yuxin, Y., & Makin, A. D. J. (2025). They look virtually the same: extraretinal representation of symmetry in virtual reality [Stage 2]. Acceptance of Version 2 by Peer Community in Registered Reports. https://doi.org/10.31234/osf.io/sfyg6_v2
 
They look virtually the same: extraretinal representation of symmetry in virtual reality Elena Karakashevska, Michael Batterley, Yao Yuxin, Alexis D. J. Makin<p>The brain must identify objects from different viewpoints that change the retinal image. This study will determine the conditions under which the brain spends computational resources to construct view-invariant, extraretinal representations in ...Life SciencesGrace Edwards2025-01-13 21:53:25 View
15 Nov 2023
STAGE 1

Somatosensory Response Changes During Illusory Finger Stretching

Neural responses to a finger-stretching illusion in human somatosensory cortex

Recommended by ORCID_LOGO based on reviews by Harry Farmer, Alexandra Mitchell and Susanne Stoll
Chronic pain is a major cause of disability that can often poorly managed with pharmacological treatments. This has prompted the exploration of other interventions like resizing illusions of body parts in augmented reality. These illusions have shown promise in conditions like osteoarthritis and complex regional pain syndrome, but it remains unclear how they alter the neural representation of body parts in the brain. The study by Hansford and colleagues aims to investigate these mechanisms in healthy participants, using somatosensory steady state evoked potentials (SSEP) and self-report questionnaires.
 
The study will involve finger stretching in an augmented reality setup that allows the researchers to independently manipulate visual and tactical stimulation. Assuming that multisensory stimulation indeed produces a robust illusion, the researchers will quantify the somatosensory evoked potentials in multisensory, unisensory, and two non-illusion control conditions. The study will provide inights into the neural mechanisms of these illusions and lay the ground for future investigations of these processes as a potential treatment for chronic pain.
 
The manuscript was evaluated over seven rounds of in-depth review by the recommender and three expert reviewers. After substantial revisions, the recommender judged that the manuscript met the Stage 1 criteria and awarded in-principle acceptance (IPA).
 
URL to the preregistered Stage 1 protocol: https://osf.io/u6gsb
 
Level of bias control achieved: Level 6. No part of the data or evidence that will be used to answer the research question yet exists and no part will be generated until after IPA.
 
List of eligible PCI RR-friendly journals:
 

References
 
1. Hansford, K. J., Baker, D. H., McKenzie, K. J., & Preston, C. E. J. (2023). Somatosensory Response Changes During Illusory Finger Stretching. In principle acceptance of Version 7 by Peer Community in Registered Reports. https://osf.io/u6gsb
Somatosensory Response Changes During Illusory Finger Stretching Kirralise J. Hansford, Daniel H. Baker, Kirsten J. McKenzie & Catherine E. J. Preston<p>Resizing illusions, delivered using augmented reality, resize a body part through either stretching or shrinking manipulations. These resizing illusions have been investigated in visuotactile, visual-only and visuo-auditory presentations. Howev...Life Sciences, Medical SciencesD. Samuel Schwarzkopf2022-11-15 17:17:18 View
27 Jun 2023
STAGE 1

Functional MRI brain state occupancy in the presence of cerebral small vessel disease -- pre-registration for a replication analysis of the Hamburg City Health Study

Testing the replicability of dynamic functional connectivity correlates of cerebral small vessel disease in the Hamburg City Health Study

Recommended by ORCID_LOGO based on reviews by Olivia Hamilton and 1 anonymous reviewer
A recent study has reported that the extent of cerebral small vessel disease (cSVD) shows associations with dynamic functional connectivity measures obtained from resting state functional MRI scans (Schlemm et al, 2022). Specifically, when the functional scan was parsed into time spent in discrete brain states, the proportion of time spent in the two most-occupied states was negatively related to a structural indicator of cSVD (volume of white matter hyperintensities of presumed vascular origin). This measure of 'fractional occupancy' was also associated with cognitive impairment as indicated by longer time to complete part B of the Trail Making Test. These findings were based on the analysis of data from 988 participants in the Hamburg City Health Study (HCHS).
 
In the present Registered Report, Schlemm (2023) will test whether these associations can be replicated in an independent sample of participants from the HCHS, not included in the earlier analysis (projected N for new analysis ~1500). In addition to the two main hypothesis tests, an exploratory multiverse analysis will be reported, systematically varying some key parameters of the MRI processing pipeline to provide further information about the robustness of the outcome of the primary hypothesis test. 
 
The Stage 1 plan was refined over two rounds of review by two relevant experts, with additional input from the recommender on the specification of the registered plan. Both reviewers are satisfied that the plan constitutes an appropriate approach to this question, and on the basis of their comments and his own evaluation, the recommender judged that the Stage 1 report meets the criteria for in-principle acceptance.
 
URL to the preregistered Stage 1 protocol: https://osf.io/9yhzc
 
Level of bias control achieved: Level 2. At least some data/evidence that will be used to answer the research question has been accessed and partially observed by the authors, but the authors certify that they have not yet observed the key variables within the data that will be used to answer the research question AND they have taken additional steps to maximise bias control and rigour.
 
List of eligible PCI RR-friendly journals:
 
 
References
 
1. Schlemm, E., Frey, B. M., Mayer, C., Petersen, M., Fiehler, J., Hanning, U., Kühn, S., Twerenbold, R., Gallinat, J., Gerloff, C., Thomalla, G. & Cheng, B. (2022). Equalization of brain state occupancy accompanies cognitive impairment in cerebral small vessel disease. Biological Psychiatry, 92, 592-602. https://doi.org/10.1016/j.biopsych.2022.03.019
 
2. Schlemm, E. (2023). Functional MRI brain state occupancy in the presence of cerebral small vessel disease – pre-registration for a replication analysis of the Hamburg City Health Study. In principle acceptance of Version 1.5 by Peer Community in Registered Reports. https://osf.io/9yhzc
Functional MRI brain state occupancy in the presence of cerebral small vessel disease -- pre-registration for a replication analysis of the Hamburg City Health StudyEckhard Schlemm<p>Objective: To replicate recent findings about the association between the extent of cerebral small vessel disease (cSVD), functional brain network dedifferentiation and cognitive impairment.</p> <p>Methods: We will analyze demographic, imaging...Life Sciences, Medical SciencesRobert McIntosh2022-11-19 14:21:28 View
16 Nov 2023
STAGE 1

The effect of stimulus saliency on the modulation of pain-related ongoing neural oscillations: a Registered Report

Are there oscillatory markers of pain intensity?

Recommended by ORCID_LOGO based on reviews by Markus Ploner and Björn Horing
Rhythmic changes in pain can lead to corresponding modulations of EEG amplitudes in theta, alpha, and beta bands. But the question remains open as to whether these modulations are actually tracking pain, or maybe rather saliency or stimulus intensity. The question is of some importance because a marker of pain per se could be useful for tracking felt pain without a verbal response, and could be useful in investigating interventions for treating pain (such as suggestion).  Here, Leu et al. (2023) will address the question of whether modulations reflect saliency or else the intensity of pain, by using an oddball paradigm in which most trials are a pain stimulus of a certain intensity, and oddball trials will sometimes occur, at either a higher intensity or a lower intensity than the baseline ones. If the modulations reflect salience, the modulation at the frequency of the oddball will be similar for high and low intensity oddballs. However, if the modulations reflect pain intensity, the modulations for the low rather than high oddball condition will be lower.
 
The Stage 1 manuscript was evaluated over three rounds of in-depth peer review, the first two consisting of substantial comments from two scholars with relevant expertise, and the third consisting of a close review by the recommender. Based on detailed responses to the reviewers' comments, the recommender judged that the manuscript met the Stage 1 criteria and therefore awarded in-principle acceptance (IPA).
 
URL to the preregistered Stage 1 protocol: https://osf.io/qbrf2
 
Level of bias control achieved: Level 6. No part of the data or evidence that will be used to answer the research question yet exists and no part will be generated until after IPA.
 
List of eligible PCI RR-friendly journals:
 
 
References
 
1. Leu, C., Forest, S., Legrain, V., & Liberati, G. (2023). The effect of stimulus saliency on the modulation of pain-related ongoing neural oscillations: a Registered Report. In principle acceptance of Version 4 by Peer Community in Registered Reports. https://osf.io/qbrf2
The effect of stimulus saliency on the modulation of pain-related ongoing neural oscillations: a Registered ReportChiara Leu, Sébastien Forest, Valéry Legrain, Giulia Liberati<p>Ongoing oscillations have been shown to be modulated in different frequency bands following phasic, tonic as well as periodic thermonociceptive stimulation. Yet, it remains unclear whether these modulations are related to pain perception, salie...Life Sciences, Medical SciencesZoltan Dienes2023-09-06 15:15:19 View
05 Feb 2024
STAGE 2
(Go to stage 1)

Functional MRI brain state occupancy in the presence of cerebral small vessel disease -- a pre-registered replication analysis of the Hamburg City Health Study

Replicable dynamic functional connectivity and cognitive correlates of cerebral small vessel disease in the Hamburg City Health Study

Recommended by ORCID_LOGO based on reviews by 1 anonymous reviewer
In a previous analysis of data from 988 participants in the Hamburg City Health Study (HCHS), Schlemm and colleagues (2022) reported significant associations between the extent of cerebral small vessel disease (cSVD) and dynamic functional connectivity measures from resting state fMRI. Specifically, the volume of white matter hyperintensities of presumed vascular origin, a structural indicator of cSVD, was negatively related to the proportion of time (‘fractional occupancy’) spent in the two most occupied functional brain states. Reduced fractional occupancy was also associated with longer times to complete part B of the Trail Making Test.
 
In the present Registered Report, Ingwersen and colleagues (2023) successfully replicated these associations between structural, functional and cognitive measures in a sample of 1651 HCHS participants not included in the earlier study. An exploratory multiverse analysis found that the associations were generally robust to different brain parcellation and confound regression strategies. These replicable patterns reinforce the idea that cSVD may disrupt the brain’s ability to enter and maintain distinct functional modes, and that these changes in functional dynamics are predictive of cognitive impairment.
 
The Stage 2 manuscript was assessed over one round of in-depth review. The recommender judged that responses to reviewer comments were appropriate, and that the manuscript met the Stage 2 criteria for recommendation.
 
URL to the preregistered Stage 1 protocol: https://osf.io/9yhzc
 
Level of bias control achieved: Level 2. At least some data/evidence that was used to answer the research question had been accessed and partially observed by the authors prior to Stage 1 in-principle acceptance, but the authors certify that they had not yet observed the key variables within the data that were used to answer the research question AND they took additional steps to maximise bias control and rigour.
 
List of eligible PCI RR-friendly journals:
 
 
References
 
1. Schlemm, E., Frey, B. M., Mayer, C., Petersen, M., Fiehler, J., Hanning, U., Kühn, S., Twerenbold, R., Gallinat, J., Gerloff, C., Thomalla, G. & Cheng, B. (2022). Equalization of brain state occupancy accompanies cognitive impairment in cerebral small vessel disease. Biological Psychiatry, 92, 592-602. https://doi.org/10.1016/j.biopsych.2022.03.019
 
2. Ingwersen, T., Mayer, C., Petersen, M., Frey, B. M., Fiehler, J., Hanning, U., Kühn, S., Gallinat, J., Twerenbold, R., Gerloff, C., Cheng, B., Thomalla, G. & Schlemm, E. (2023). Functional MRI brain state occupancy in the presence of cerebral small vessel disease -- a pre-registered replication analysis of the Hamburg City Health Study. Acceptance of Version 2.01 by Peer Community in Registered Reports. https://github.com/csi-hamburg/HCHS-brain-states-RR/blob/f9d00adbbcf9593d8d191bf5b93912141b80ab1b/manuscript/build/main.pdf
 
Functional MRI brain state occupancy in the presence of cerebral small vessel disease -- a pre-registered replication analysis of the Hamburg City Health StudyThies Ingwersen, Carola Mayer, Marvin Petersen, Benedikt M. Frey, Jens Fiehler, Uta Hanning, Simone Kühn, Jürgen Gallinat, Raphael Twerenbold, Christian Gerloff, Bastian Cheng, Götz Thomalla, Eckhard Schlemm, <p><strong>Objective</strong>: To replicate recent findings on the association between the extent of cerebral small vessel disease (cSVD), functional brain network dedifferentiation, and cognitive impairment.</p> <p><strong>Methods:</strong> We a...Life Sciences, Medical SciencesRobert McIntosh2023-10-17 09:53:02 View
10 Apr 2024
STAGE 2
(Go to stage 1)

Cue-based modulation of pain stimulus expectation: do ongoing oscillations reflect changes in pain perception? A Registered Report

Understanding oscillatory correlates of pain expectation

Recommended by ORCID_LOGO based on reviews by Zoltan Dienes, Chris Chambers and Markus Ploner
Recent studies using an EEG frequency tagging approach have reported modulations of alpha, beta and theta bands at the stimulation frequency during nociceptive/painful thermal stimulation compared to non-nociceptive/non-painful vibrotactile stimulation. Prior expectations of the intensity of upcoming painful stimuli are known to strongly modulate the subjective experience of those stimuli. Thus, modulating the expectation of pain should result in a change in the modulation of oscillations if these factors are indeed linked.
 
In this study, Leu, Glineur and Liberati modulated expectations of pain (low or high intensity) in 40 participants prior to delivering thermal cutaneous stimulation (low, medium or high intensity). They recorded how intense participants expected the pain to be, and how intense they felt it to be, as well as EEG to assess oscillatory differences across the expectation and intensity conditions.
 
The results confirmed that there was a strong effect of expectation on the perceived stimulus intensity. However, contrary to the hypotheses, this was not reflected in the cortical oscillations. Overall this indicates a possible dissociation between perceived pain and modulation of ongoing oscillations in the theta, alpha and beta bands. 
 
The Stage 2 manuscript was evaluated over one round of in-depth review. Based on detailed responses to the reviewers' comments, the recommender judged that the manuscript met the Stage 2 criteria and awarded a positive recommendation.
 
URL to the preregistered Stage 1 protocol: https://osf.io/y6fb8
 
Level of bias control achieved: Level 6. No part of the data or evidence that was used to answer the research question was generated until after IPA.
 
List of eligible PCI RR-friendly journals:
 
References
 
1. Leu, C., Glineur, E. & Liberati, G. (2023). Cue-based modulation of pain stimulus expectation: do ongoing oscillations reflect changes in pain perception? [Stage 2] Acceptance of Version 2 by Peer Community in Registered Reports. https://osf.io/awrge
Cue-based modulation of pain stimulus expectation: do ongoing oscillations reflect changes in pain perception? A Registered ReportChiara Leu, Esther Glineur, Giulia Liberati<p style="text-align: justify;">A promising stream of investigations is targeting ongoing neural oscillations and whether their modulation could be related to the perception of pain. Using an electroencephalography (EEG) frequency tagging approach...Life Sciences, Medical SciencesGemma Learmonth 2024-01-23 19:35:39 View
07 Mar 2025
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On the neural substrates of mind wandering and dynamic thought: A drug and brain stimulation study

Does dopamine availability influence the effect of brain stimulation on mind-wandering?

Recommended by ORCID_LOGO based on reviews by Chris Chambers and 1 anonymous reviewer
Mind-wandering broadly refers to the phenomenon by which a person's thoughts are directed towards internally generated states as opposed to being directed towards those that are task-relevant. It has been proposed that mind-wandering and cognitive control are supported by overlapping neural systems. While neuroimaging work has implicated prefrontal cortex in both mind-wandering and cognitive control, studies testing its causal role using transcranial direct current stimulation (tDCS) have been inconclusive.
 
Here, Rasmussen and colleagues (2025) put to a strict test the question of whether the effects of prefrontal cortex tDCS on mind-wandering are mediated by dopaminergic availablility, which is known to be important for cognitive control. Using noninvasive brain stimuluation (prefrontal cortex tDCS vs sham) and a pharmacological intervention (levodopa vs. placebo), they found that contrary to some previous work, stimulation of prefrontal cortex does not alter mind-wandering. By contrast, in the absence of stimulation, increasing dopamine availability via levodopa reduced the frequency of freely moving thought. Together, these results clarify the degree to which prefrontal cortex tDCS and dopamine play a causal role in mind-wandering
 
The Stage 2 manuscript was evaluated over one round of in-depth review. Based on detailed responses to the reviewers' comments, the recommender judged that the manuscript met the Stage 2 criteria and awarded a positive recommendation.
 
URL to the preregistered Stage 1 protocol: https://osf.io/ujp7e
 
Level of bias control achieved: Level 6. No part of the data or evidence that was used to answer the research question was generated until after IPA. 
 
List of eligible PCI RR-friendly journals:
 
 
References
 
Rasmussen, T., Dux, P. E. & Filmer, H. (2025). On the neural substrates of mind wandering and dynamic thought: A drug and brain stimulation study [Stage 2]. Acceptance of Version 2 by Peer Community in Registered Reports. https://doi.org/10.1101/2024.11.02.620526 
 
On the neural substrates of mind wandering and dynamic thought: A drug and brain stimulation studyTara Rasmussen, Paul E. Dux and Hannah Filmer<p>The impact of mind wandering on our daily lives ranges from diminishing productivity, to facilitating creativity and problem solving. There is evidence that distinct internal thought types can be modulated by transcranial direct current stimula...Life Sciences, Medical SciencesMaxine Sherman2024-10-28 03:18:20 View